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Size and structure of the sequence space of repeat proteins
(Public Library of Science, 2019-08)
The coding space of protein sequences is shaped by evolutionary constraints set by requirements of function and stability. We show that the coding space of a given protein family-the total number of sequences in that ...
Deposition of Foreign Proteins in Plant Vacuoles: A Unique Characteristic of Plant-Based Platforms
(Nova Science Publishers, 2019)
The global demand for biological and industrial enzymes is growing driven by the increasing world population and the expansion of their biotechnological applications. To be active and soluble, many of these proteins require ...
A preliminary differential proteomic analysis of the periplasmic fraction in Acidithiobacillus ferrooxidans planktonic and attached cells exposed to chalcopyrite
(2009-12-28)
The Acidithiobacillus ferrooxidans periplasmic space is known to have proteins involved in the respiratory chains. There are no reports about the expression of the periplasmic proteins in A. ferrooxidans cells attached to ...
QSLiM Finder: Improved short linear motif prediction using specific query protein data
(Oxford University Press, 2015-03)
Motivation: The sensitivity of de novo short linear motif (SLiM) prediction is limited by the number of patterns (the motif space) being assessed for enrichment. QSLiMFinder uses specific query protein information to ...
Exploring conformational space with thermal fluctuations obtained by normal-mode analysis
(American Chemical Society, 2020-06)
Proteins in their native states can be represented as ensembles of conformers in dynamical equilibrium. Thermal fluctuations are responsible for transitions between these conformers. Normal-modes analysis (NMA) using elastic ...
Effect of Spacing on Seed, Protein, and Oil Production of Four Okra VarietiesTítulo en español.
(University of Puerto Rico Mayagüez Campus Agricultural Experiment Station, 1980)
Detecting repetitions and periodicities in proteins by tiling the structural space
(American Chemical Society, 2013-06)
The notion of energy landscapes provides conceptual tools for understanding the complexities of protein folding and function. Energy landscape theory indicates that it is much easier to find sequences that satisfy the ...